WebJun 8, 2024 · (3) Wide Peak Limits: The “wide peak” boundaries most likely to contain the targeted genes. These are listed in genomic coordinates and marker (or probe) indices. … Web1 day ago · We identified 20 amplified cytobands enriched in ctDNA shedders (false-discovery rate (FDR) q < 0.05) with a GISTIC score difference (GSD) of at least 0.5 (Fig. 2h,i), a previously defined ...
GISTIC2.0 facilitates sensitive and confident localization of the ...
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maftools/gisticChromPlot.R at master · PoisonAlien/maftools
WebOct 17, 2015 · A total of 79 known genes map to the 12q24 GISTIC wide peak, and we tested 67 with available probesets mapping to 12q24 for differential expression among these groups . Both chromosome 12q24 gain and MYCN amplification (which is correlated with high LIN28B expression) were associated with higher RAN expression (p = 0.02 and … WebApr 28, 2011 · Cytoband GISTIC Wide Peak. 9p21.3 chr9:21855498-22438737 1.33E-182 CDKN2A/2B. 10q23.31 chr10:89567727-90024018 6.32E-20 PTEN. 1p36.23 … WebNov 8, 2024 · getGISTICPeaks: Download GISTIC2 peak-level data from the Firehose pipeline; getLinks: Get resource links from inputs; getMutationRate: Make a table for … tandy computers in keyboard